hippie


HIPPIE: A High-Throughput Identification Pipeline for Promoter Interacting Enhancer elements

 

Introduction

HIPPIE is the workflow for analyzing Hi-C paired-end reads in FASTQ format and predict enhancer–target gene interactions. HIPPIE streamlines the entire processing phase including reads mapping, quality control and enhancer–target gene prediction as well as characterizing the interactions.

 

Access HIPPIE

 

Credits

If you use HIPPIE for your research, please use the following citation:

Hwang Y-C, Lin C-F, Valladares O, Malamon J, Zheng Q, Gregory B D, and Wang L-S. HIPPIE: A high-throughput identification pipeline for promoter interacting enhancer elements. (2014, in preparation)

 


Licensing

[Under construction]

 

[Last update: 2014/5/8]


Questions? yihhwang [at] mail.med.upenn.edu | Wang Lab | The Institute for Biomedical Informatics | University of Pennsylvania